People

Professor Morten E. Allentoft
Head of the TrEnD Laboratory

> View Google Scholar profile

Morten is an evolutionary biologist and was recruited in mid-2020 to lead the TrEnD Lab. He obtained a PhD from Canterbury University, New Zealand in 2011 and then established himself as a group leader at Centre for GeoGenetics (University of Copenhagen, Denmark). He has a background in ancient DNA (aDNA) research, working primarily on population genetics of extinct megafauna and ancient humans, and aDNA method development. Although Morten is still engaged in ancient DNA projects, most of his current research revolves around molecular evolution, population genetics and conservation genetics – with a particular passion for reptiles and amphibians. Our vision in TrEnD Lab is to practice a holistic form of molecular ecology by merging eDNA, aDNA and genomic disciplines. While based at Curtin University, Allentoft maintains a fractional affiliation with University of Copenhagen, ensuring a strong collaborative connection across the two continents.

Associate Professor Zoe Richards
Senior Research Fellow

> View Google Scholar Profile

Zoe is a coral biologist (molecular ecology and taxonomic expertise) and a Senior Research Fellow. Zoe completed her PhD at James Cook University on the implications of rarity for Acropora conservation and now leads the CORE research group which specialises in the area of coral biodiversity and how best to monitor and protect it. Active areas of current research include examining the ecology and resilience of coral communities in Western Australia, examining the response of coral biodiversity to disturbance and resolving taxonomic problems with total evidence approaches. Zoe is also involved in numerous phylogenomic, population genetic and eDNA projects that aim to explore species divergence, ecological connectivity and benthic biodiversity.

Current Students in the Coral Research Group:
Katrina West (Postdoc); Arne Adam (PhD); Jason Alexander (PhD); David Juszkiewicz (PhD); Georgia Nester (PhD); Sophie Preston (Masters); Rodrigo Garcia (Remote Sensing Specialist and Adjunct Research Scientist).

Associate Professor Paul Nevill

> Genetics Lead – Australian Research Council Centre for Mine Site Restoration (CMSR)
> View Google Scholar profile

Paul’s research focuses on the use of the latest molecular approaches for the conservation and the recovery of ecosystems. Paul is interested in the use of molecular ecology to understand the genetic factors that impact threatened species and in the use of genetics to improve restoration monitoring. Since 2010 Paul has completed a post-doc in conservation genetics at Kings Park Botanic Garden prior to joining Curtin University in 2015. During and post-PhD studies, Paul has established collaborations with government agencies, private industries and other academic institutions. Paul mentors and supervises HDR students and is also involved in undergraduate teaching at Curtin University.

Current Students:
Sheree Walters (PhD), Mieke van der Heyde (PhD), Kristen Fernandes (PhD), Kaylene Craig (PhD), Joshua Kestel (PhD)

Dr. Nicole White
Research Fellow

> View Google Scholar Profile

Nicole is a Research Scientist and the Lab Manager for the Trace and Environmental DNA Laboratory. Nicole’s research focuses on the use of cutting-edge and traditional molecular approaches for the conservation and protection of Australia’s unique fauna. In 2012, Nicole obtained her PhD in Biological Sciences and her research program focused on the development and application of genetic tools for the conservation, management and protection of Western Australia’s endangered white-tailed black-cockatoo species. Since 2012, Nicole completed a post-doc in ancient DNA, conservation genetics and wildlife forensics at Murdoch University prior to joining Curtin University in 2014. Nicole’s current research involves the development of eDNA tools for subterranean fauna detection from environmental substrates such as groundwater and sediment.

Mahsa Mousavi Mousaviderazmahalleh 

> View Google Scholar profile

Mahsa completed her PhD at The University of Western Australia on narrow-leafed lupin domestication and biodiversity, which also involved developing genomic resources for seven of its fungal pathogens using bioinformatic approaches. Inspired by the transferability of bioinformatics, she joined TrEnD in 2018 as a post-doctoral researcher working on an NHMRC funded project to determine the causative agents of tick-borne disease in Australia using metabarcoding techniques. Her current research focus is on developing genomic resources for the Pilbara Olive Python which is part of the eDGES program. In addition, she develops pipelines and scripts for data analysis, and provide bioinformatic support to students and staff. She is also affiliated with eDNA frontiers, which provides environmental DNA services to a variety of industries, such as oil/gas and fisheries.

Mattia Sacco

> View Google Scholar Profile

Mattia is a TrEnD post-doctoral researcher interested in freshwater environments and the incorporation of multidisciplinary designs into the study of functional ecology. He completed his PhD at Curtin University on the ecological dynamics sustaining the subterranean biota of a West Australian groundwater ecosystem, a study that involved state-of-the-art isotopic and molecular techniques. His current project, funded by the eDGES program, focuses on the use of isotope analysis (SIA and CSIA) and eDNA technology to monitor biodiversity and characterize the ecosystem functioning of hypersaline lakes within the Chilean precordillera. Given the interdisciplinarity of his work and international experience, Mattia has an extended network of collaborators in Europe, America and Australia.

Mieke van der Heyde

> View Google Scholar profile

Mieke is currently a Research Associate with the Trace and Environmental DNA (TrEnD) Laboratory. Her research focus is developing and applying eDNA methods to monitor terrestrial and subterrestrial ecosystems. Mieke completed her PhD in 2020 with the ARC Centre for Mine Site Restoration (CMSR) and the TrEnD Labs. Her research focussed on the application of eDNA surveys to monitor soil microbes, vertebrates, invertebrates, and plants during mine site restoration. In late 2020, Mieke started her post-doc position at Curtin studying underground communities living in the groundwater (stygofauna).

Dr Matthew Campbell
Research Fellow

> View Google Scholar profile

Matt is a post-doctoral researcher investigating the potential of ancient sedimentary DNA as a tool for reconstructing Southwest Australia’s (SWA) paleoecology and paleoclimate during the late Quaternary period. In 2021, he earned his Ph.D. in Chemistry from Curtin University, studying modern microbial mat communities using metatranscriptomics and organic geochemical techniques. Post-Ph.D., Matt joined the TrEnD Lab as a research technician facilitating laboratory operations and working on a variety of eDNA projects. In 2023, he become a post-doctoral researcher under the supervision of Prof Morten E. Allentoft.  He is currently working on extracting DNA from sediment cores sourced from lakes and wetlands in the SWA region and applying high-throughput sequencing techniques to identify past plant and animal communities. Matt is a strong advocate for the use of interdisciplinary approaches to address complex environmental challenges and believes that ancient DNA has great potential for informing conservation and management strategies in the face of global environmental change.

Sherralee Lukehurst
Research Officer

Sherralee is an experienced Molecular Biologist, who has previously worked at the Department of Primary Industries and Regional Development in the areas of fish health and aquatic biosecurity. In her current position, funded by the eDGES program, Sherralee is working on enhancing and validating the use of eDNA metabarcoding techniques for the purpose of detecting high priority Invasive Marine Species (IMS) for biosecurity applications.

Jacquelyn Jones, PhD

Laboratory Manager, TrEnD Lab

Jackie joined TrEnD in October 2023, and provides technical and administrative support to the team as Lab Manager. Jackie completed her Bachelor of Science (Hons) with a degree in Chemistry and Biological Sciences in 2015 at Edith Cowan University. In 2021 she completed her PhD at Curtin university, under the primary supervision of AssProf Claus Christopherson. Jackie has worked on research projects that focus on the link between the gut microbiome and long-term human health.

Alishum Ali

Alishum Ali is a multidisciplinary scientist who completed his undergraduate and honours studies at Murdoch University. His qualifications revolve around human biology & chemistry such as molecular biology and biochemistry. In 2017, he enrolled in a PhD program at Curtin University’s TrEnD lab with Professor Mike Bunce and Dr Claus Christophersen supported by a PhD scholarship from WAHMCC. His decision to do a PhD was intricately personal, due to his son “Yusif” being born preterm and now his PhD project concentrates on preventing preterm birth. Technically, he will be working with samples and data collected in a local hospital by the Western Australian Pregnancy Biobank (WAPB). He will generate and integrate patient multi-Omics data using machine learning models to discover predictive biomarkers.

In the TrEnD lab, Ali will be using DNA metabarcoding, shot-gun sequencing and bioinformatics for in-depth characterization of the pregnancy microbiome. His study design will assess biomarkers before and after current intervention. He envisages that the research will eventually help obstetricians deliver better health care to vulnerable women.

Kristen Fernandes

> View Google Scholar profile

Kristen is a PhD candidate undertaking a co-enrolled PhD with Curtin University and the University of Copenhagen. She is under the supervision of Prof Michael Bunce, Dr Paul Nevill, Prof Tom Gilbert, and Dr Kristine Bohmann. Kristen completed her undergraduate studies and honours at Curtin University in 2017 examining the recovery of insect communities at restored mine sites through invertebrate DNA (iDNA) metabarcoding. Her PhD research further explores this area of research and focuses on looking at the recovery of insect communities and the communities of organisms (both macro and micro) that they vector after changes in land uses using iDNA metabarcoding techniques.

Arne Adam

> View Google Scholar profile

Arne is a PhD candidate started in June 2018 under the supervision of Dr. Zoe Richards, Adjunct Professor Mike Bunce and Dr. Luke Thomas (AIMS). Arne completed his undergraduate studies in 2012 at the University of Ghent (Belgium), examining the foraging behaviour of Atlantic cod at windmill farms at the North Sea. In 2013, he finished his masters at the University of Brussels (Belgium), determining the efficiency and feasibility of using airlift suction device to sample hard substrate macrofauna. After working in the areas of bio- and genetic monitoring of fish and benthic communities in the North Sea and researching teeth development in zebrafish, Arne moved to Sydney to study habitat complexity in temperate and tropical reefs using 3D photogrammetry before working as a research assistant at the Victor Chang Cardiac Research Institute, researching a new model for cardiac trabeculation in early heart development. His PhD project will focus on estimating how coral reefs in Western Australia will be transformed in the future by applying species distribution modelling. Furthermore, he will integrate ecological and genomic data to further inform these models and provide better predictions of future coral distributions in WA.

Jason Alexander

Jason is a PhD student under the supervision of Prof Euan Harvey and Dr Zoe Richards. Jason completed his undergraduate studies in Marine Science and Conservation Biology at Murdoch University in 2004. Jason then, between travelling, worked as a Zoologist for an environmental consultancy. Jason’s honours project involved the design of specific genetic primer sets and the detection of reef-building coral diversity from environmental DNA and in his PhD project he is extending those skills to examining the biodiversity of artificial reefs.

Georgia Nester

Georgia is an PhD student under the supervision of Prof Mike Bunce, Prof Euan Harvey and Dr Zoe Richards. Georgia completed her undergraduate studies at Curtin University in 2017. Georgia’s honours project involved developing environmental DNA assays capable of detecting cryptic and endangered Syngnathid species in various aquatic environments. Her PhD project seeks to examine ‘blue biodiversity’, that is the biodiversity in understudied deepwater and southern ocean pelagic ecosystems.

David Juszkiewicz

David completed his first class honours project under the supervision of Prof Mike Bunce and Dr Zoe Richards after finding an interest in scleractinian (hard-coral) taxonomy during his volunteering experiences at the West Australian Museum and Department of Parks and Wildlife. For his honours project, Davids undertook a phylogeographic study of the scleractinia Plesiastrea versipora, and he is extending that approach to the genus Porites in his PhD.

Ben Heyward

Ben is a PhD student under the supervision of Morten Allentoft, Nicole White, Mahsa Mousavi-Derazmahalleh, and Bill Bateman. He completed his undergraduate studies and honours at Curtin University (2022) on the decay rate of Pilbara olive python DNA. Ben seeks to further investigate the genomics of this species through his PhD, with a focus on whole-genome studies and biomonitoring.

Mahima Tawal

Alicia Tan

Alicia is a PhD candidate at the School of Molecular and Life Sciences and the Curtin Health Innovation Research Institute (CHIRI), under the supervision of A/Prof Claus Christophersen, Dr Danielle Dye, A/Prof Christopher Peacock, Prof Morten Allentoft and Prof Valerie Verhasselt. She graduated with a B.Sc. in Biomedical Sciences and was awarded the Transnational Prize and Medal in 2017, and a Master of Infectious Diseases with Distinction (MID) in 2019 at The University of Western Australia (UWA). Her previous experience is in microbiology and infectious diseases— she worked on malaria during an internship at the Agency for Science, Technology and Research (A*STAR) in Singapore, Neisseria at The Marshall Centre for Infectious Diseases, Research and Training in Perth in 2018, including a project under The Australian Society for Microbiology (ASM) WA Vacation Scholarship, and researched the antimicrobial activity of kefir at The Marshall Centre for her MID project. Apart from pathogens, she is also interested in the role of commensals and microbial communities in influencing health states, as well as microbiome-host interactions. For her PhD, she will be studying the maternal (gut and breastmilk) and infant (gut) microbiome at critical periods of development, together with the effect of prebiotic and probiotic interventions, maternal diet, and antibody-bacterial microbiota binding patterns in allergic disease.

Alen Tanoyo

BSc (Environmental Science) Curtin University, Graduated 2022

Alen is a Master of Research candidate under the supervision of Prof Morten Allentoft, Dr Mahsa Mousavi-Derazmahalleh, and Dr Paul Doughty (Western Australian Museum [WAM]). Alen completed a BSc in Environmental Science at Curtin University, where he spent an extended internship at WAM working on the phylogeography of paddy frogs (Dicroglossidae: genus Fejervarya) in the Lesser Sunda Archipelago. His master’s research investigates the phylogenomics and biogeography of the world’s smallest monitor lizard species (Varanidae: Varanus eremius species group). This group of monitor lizards are desert-adapted and widespread, making them the ideal model taxa to advance ecological understanding of Australia’s remote deserts.

Sophie Preston

Sophie Preston is a Master of Research student, supervised by Dr. Zoe Richards and Dr. Kar-Chun Tan. Her project focusses on a combined traditional and molecular approach to diagnosing the scleractinian coral disease, growth anomalies. Her research is a combination of ecological surveys, histology, geochemistry, bacterial metabarcoding and environmental DNA. Prior to her Masters, she completed a Bachelor of Science (Coastal and Marine Science) at Curtin University in 2018.

Amy Carmignani

Amy is an honours student under the supervision of Dr Zoe Richards. She completed her undergraduate BSc in Environmental Management & Sustainability and Marine & Wildlife Biology at Murdoch University in 2020 after a career change away from legal administration (or more accurately; after travelling and working overseas on conservation projects). She currently works for the Australian Wildlife Conservancy and is a committee member of the Murdoch University Divers Club. She has participated in a range of fieldwork relating to corals, seagrass, estuaries, marine ecology, plants, mammals and birds. Her Honours project is focused on examining the ecophysiology of mesophotic corals at Ashmore Reef. She will be undertaking a deep sea expedition on board the R/V Falkor and will collaborate with researchers at the WA Museum, Australian Institute of Marine Science and Museum of Tropical Queensland.

Joel Bennett

Joel is an honours student under the supervision of Dr Zoe Richards. He completed his undergraduate BSc in Coastal and Marine Science at Curtin University in 2020, after traveling North America and South East Asia for two years. He is interested in marine mammal and fish ecology, particularly along the Western Australian coastline. His Honours project is focused on utilizing eDNA approaches to advance knowledge about dugong populations, habitat use and diet. He collaborates with Associate Professor Kathryn McMahon at Edith Cowan University and Dr William Robbins from the Department of Biodiversity Conservation and Attractions.